Church Payroll Software OnPay for Ministries & Nonprofits

Start by listing every type of compensation your church provides, including regular salaries, housing allowances, love offerings, contractor payments, and tax-exempt reimbursements. Clergy compensation, in particular, demands special attention due to its complexity. Ministers may be exempt from certain withholdings, such as federal unemployment tax, while still needing detailed tracking of housing allowances for tax reporting. One drawback is that MinistryWorks offers fewer third-party integrations compared to some competitors, which may affect churches that rely heavily on external accounting or management systems. Additionally, fees are charged for each pay run, so churches with frequent payroll cycles might want to consider this cost factor. For churches deeply invested in QuickBooks ProAdvisor ministry-specific payroll needs and valuing expert support, MinistryWorks remains a trusted solution with features aligned closely to religious organizations.

Church Bookkeeping Services: Let us manage your books

Your processing fee is pulled via ACH debit along with the funds needed for payroll. Aplos partners with Stripe Payments Company for money transmission services and account services with funds held at Fifth Third Bank N.A., Member FDIC. Slice and dice your financial reporting to see the exact data you need across your organization, including giving reports. Specialized in fund accounting and equipped with Aplos Software, our Bookkeeping Specialists have helped thousands of churches, and we do best payroll service for churches it well. Simple, secure, and hassle-free payroll processing wherever you are. Our services are tailored to each individual client, so we offer multiple options for reporting payroll.

Donorbox integration with QuickBooks

They offer a free version for one user for businesses with under $50,000 in revenue annually. PowerChurch Plus, the desktop version, costs a one-time fee of $395 for a download or $415 for physical media. You can use Zapier to integrate Donorbox and Sage Accounting, too! Learn about our Zapier integration in the below video and unlock thousands of such integrations for your nonprofit. A church should also conduct regular audits of its books, to ensure everything is in order.

Best for Church-Specific Features

Our church accounting, payroll, compliance, and tax services were designed specifically for churches. In the end, that means you’re free to focus on what really matters in your ministry – reaching people and making a difference. You’ll also need to decide whether you want to issue paper checks or set up direct deposit. Not only do you have to figure out how to calculate wages and withholdings, but you also have to stay compliant with federal and state laws and exemptions. Fortunately, many excellent church payroll services are out there to help you get it right.

• Charlie is a sought-after speaker and has presented at numerous conferences and seminars on insurance and risk management topics.
• When you work with ChurchShield, you are supported by our payroll team from day one of the onboarding process.
• Outsourcing payroll allows you to tap into the many years of experience we here at ChurchShield have working with church and ministerial payroll, so you can have complete confidence in your payroll accuracy.
• Their accounting software has both advanced features for churches with a CPA (Certified Public Accountant) and more basic features so churches of any size can keep audit-worthy books.

Keep an eye on the big picture so you can make better business decisions. Our robust small business accounting reports are easy to use and show month-to-month or year-to-year comparisons so you can easily identify cash flow trends. With Xero online accounting, trial balance you can send invoices, automate reminders and so much more from the comfort of your desktop or mobile app.